ceREEBerus
Contributing
Modules and Documentation
Tutorial Notebooks
ceREEBerus
Index
Index
_
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A
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B
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C
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D
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E
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F
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G
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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__add__() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
__getitem__() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
__init__() (cereeberus.compute.unionfind.UnionFind method)
(cereeberus.distance.interleave.Assignment method)
(cereeberus.distance.interleave.Interleave method)
(cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
(cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
(cereeberus.reeb.mapper.MapperGraph method)
(cereeberus.reeb.merge.MergeTree method)
(cereeberus.reeb.reebgraph.ReebGraph method)
__matmul__() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
__setitem__() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
__sub__() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
A
absmax() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
add_edge() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
(cereeberus.reeb.mapper.MapperGraph method)
(cereeberus.reeb.merge.MergeTree method)
(cereeberus.reeb.reebgraph.ReebGraph method)
add_edges_from() (cereeberus.reeb.reebgraph.ReebGraph method)
add_label() (cereeberus.reeb.merge.MergeTree method)
add_label_edge() (cereeberus.reeb.merge.MergeTree method)
add_node() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
(cereeberus.reeb.mapper.MapperGraph method)
(cereeberus.reeb.merge.MergeTree method)
(cereeberus.reeb.reebgraph.ReebGraph method)
add_nodes_from() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
(cereeberus.reeb.reebgraph.ReebGraph method)
adjacency_matrix() (cereeberus.reeb.reebgraph.ReebGraph method)
all_func_vals() (cereeberus.distance.interleave.Assignment method)
Assignment (class in cereeberus.distance.interleave)
B
B() (cereeberus.distance.interleave.Assignment method)
B_down() (cereeberus.distance.interleave.Assignment method)
B_up() (cereeberus.distance.interleave.Assignment method)
bezier_curve() (in module cereeberus.compute.draw)
block_diag_NaN() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
boundary_matrix() (cereeberus.reeb.reebgraph.ReebGraph method)
C
cereeberus.compute.draw
module
cereeberus.compute.unionfind
module
cereeberus.data.ex_embedgraphs
module
cereeberus.data.ex_mappergraphs
module
cereeberus.data.ex_mergetrees
module
cereeberus.data.ex_reebgraphs
module
cereeberus.distance.interleave
module
cereeberus.distance.labeled_blocks
module
cereeberus.reeb.embeddedgraph
module
cereeberus.reeb.mapper
module
cereeberus.reeb.merge
module
cereeberus.reeb.reebgraph
module
check_column_sum() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
col_sum() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
connected_components() (cereeberus.reeb.reebgraph.ReebGraph method)
D
D() (cereeberus.distance.interleave.Assignment method)
dancing_man() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
dict_to_list() (in module cereeberus.compute.draw)
down_degree() (cereeberus.reeb.reebgraph.ReebGraph method)
draw() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
(cereeberus.reeb.merge.MergeTree method)
(cereeberus.reeb.reebgraph.ReebGraph method)
draw_all_B() (cereeberus.distance.interleave.Assignment method)
draw_all_graphs() (cereeberus.distance.interleave.Assignment method)
(cereeberus.distance.interleave.Interleave method)
draw_all_I() (cereeberus.distance.interleave.Assignment method)
draw_all_phi() (cereeberus.distance.interleave.Assignment method)
(cereeberus.distance.interleave.Interleave method)
draw_all_psi() (cereeberus.distance.interleave.Assignment method)
(cereeberus.distance.interleave.Interleave method)
draw_B() (cereeberus.distance.interleave.Assignment method)
draw_D() (cereeberus.distance.interleave.Assignment method)
draw_I() (cereeberus.distance.interleave.Assignment method)
draw_phi() (cereeberus.distance.interleave.Assignment method)
draw_psi() (cereeberus.distance.interleave.Assignment method)
E
EmbeddedGraph (class in cereeberus.reeb.embeddedgraph)
exampleEmbeddedGraph() (in module cereeberus.data.ex_embedgraphs)
F
F() (cereeberus.distance.interleave.Assignment method)
find() (cereeberus.compute.unionfind.UnionFind method)
fit() (cereeberus.distance.interleave.Interleave method)
fix_pos_f() (cereeberus.reeb.merge.MergeTree method)
func_to_edge_dict() (cereeberus.reeb.reebgraph.ReebGraph method)
func_to_vertex_dict() (cereeberus.reeb.reebgraph.ReebGraph method)
G
G() (cereeberus.distance.interleave.Assignment method)
g_omega() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
g_omega_edges() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
get_all_block_indices() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
get_all_cols() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
get_all_labels() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
get_all_rows() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
get_array() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
get_bounding_box() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
get_bounding_radius() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
get_cols_dict() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
get_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
get_finite_nodes() (cereeberus.reeb.merge.MergeTree method)
get_function_values() (cereeberus.reeb.reebgraph.ReebGraph method)
get_interleaving_map() (cereeberus.distance.interleave.Assignment method)
(cereeberus.distance.interleave.Interleave method)
get_largest_component() (cereeberus.reeb.reebgraph.ReebGraph method)
get_leaves() (cereeberus.reeb.merge.MergeTree method)
get_mean_centered_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
get_multi_edges() (cereeberus.reeb.reebgraph.ReebGraph method)
get_next_vert_name() (cereeberus.reeb.reebgraph.ReebGraph method)
get_rows_dict() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
I
I() (cereeberus.distance.interleave.Assignment method)
induced_subgraph() (cereeberus.reeb.mapper.MapperGraph method)
(cereeberus.reeb.reebgraph.ReebGraph method)
inputToDirRootTree() (cereeberus.reeb.merge.MergeTree method)
Interleave (class in cereeberus.distance.interleave)
interleave_example_A() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
interleave_example_B() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
inv_image() (cereeberus.reeb.reebgraph.ReebGraph method)
is_col_sum_1() (cereeberus.distance.labeled_blocks.LabeledMatrix method)
J
juggling_man() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
L
label_all_leaves() (cereeberus.reeb.merge.MergeTree method)
LabeledBlockMatrix (class in cereeberus.distance.labeled_blocks)
LabeledMatrix (class in cereeberus.distance.labeled_blocks)
LCA() (cereeberus.reeb.merge.MergeTree method)
LCA_matrix() (cereeberus.reeb.merge.MergeTree method)
line() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
line_loop_index() (in module cereeberus.compute.draw)
loss() (cereeberus.distance.interleave.Assignment method)
loss_by_block() (cereeberus.distance.interleave.Assignment method)
loss_table() (cereeberus.distance.interleave.Assignment method)
lower_edges() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
M
MapperGraph (class in cereeberus.reeb.mapper)
mapperify() (cereeberus.reeb.mapper.MapperGraph method)
max() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
max_block_index() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
max_f() (cereeberus.reeb.reebgraph.ReebGraph method)
MergeTree (class in cereeberus.reeb.merge)
min() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
min_block_index() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
min_f() (cereeberus.reeb.reebgraph.ReebGraph method)
module
cereeberus.compute.draw
cereeberus.compute.unionfind
cereeberus.data.ex_embedgraphs
cereeberus.data.ex_mappergraphs
cereeberus.data.ex_mergetrees
cereeberus.data.ex_reebgraphs
cereeberus.distance.interleave
cereeberus.distance.labeled_blocks
cereeberus.reeb.embeddedgraph
cereeberus.reeb.mapper
cereeberus.reeb.merge
cereeberus.reeb.reebgraph
N
number_connected_components() (cereeberus.reeb.reebgraph.ReebGraph method)
O
old_fit() (cereeberus.distance.interleave.Interleave method)
optimize() (cereeberus.distance.interleave.Assignment method)
P
parallelogram() (cereeberus.distance.interleave.Assignment method)
parallelogram_Edge_Vert() (cereeberus.distance.interleave.Assignment method)
parallelogram_Edge_Vert_matrix() (cereeberus.distance.interleave.Assignment method)
parallelogram_matrix() (cereeberus.distance.interleave.Assignment method)
phi() (cereeberus.distance.interleave.Assignment method)
(cereeberus.distance.interleave.Interleave method)
plot() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
plot_adjacency_matrix() (cereeberus.reeb.reebgraph.ReebGraph method)
plot_boundary_matrix() (cereeberus.reeb.reebgraph.ReebGraph method)
psi() (cereeberus.distance.interleave.Assignment method)
(cereeberus.distance.interleave.Interleave method)
R
randomizeMergeFunction() (in module cereeberus.data.ex_mergetrees)
randomMergeTree() (in module cereeberus.data.ex_mergetrees)
reeb_graph_from_direction() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
reeb_plot() (in module cereeberus.compute.draw)
ReebGraph (class in cereeberus.reeb.reebgraph)
relabel_nodes() (cereeberus.reeb.reebgraph.ReebGraph method)
remove_all_regular_vertices() (cereeberus.reeb.reebgraph.ReebGraph method)
remove_isolates() (cereeberus.reeb.reebgraph.ReebGraph method)
remove_node() (cereeberus.reeb.merge.MergeTree method)
(cereeberus.reeb.reebgraph.ReebGraph method)
remove_nodes_from() (cereeberus.reeb.reebgraph.ReebGraph method)
remove_regular_vertex() (cereeberus.reeb.reebgraph.ReebGraph method)
S
set_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
set_interleaving_maps() (cereeberus.distance.interleave.Assignment method)
set_mean_centered_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
set_pos_from_f() (cereeberus.reeb.mapper.MapperGraph method)
(cereeberus.reeb.merge.MergeTree method)
(cereeberus.reeb.reebgraph.ReebGraph method)
set_random_assignment() (cereeberus.distance.interleave.Assignment method)
set_single_assignment() (cereeberus.distance.interleave.Assignment method)
shape() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
simple_loops() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
simple_loops_unordered() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
size() (cereeberus.distance.labeled_blocks.LabeledMatrix method)
slice() (cereeberus.reeb.reebgraph.ReebGraph method)
slope_intercept() (in module cereeberus.compute.draw)
smoothing() (cereeberus.reeb.mapper.MapperGraph method)
(cereeberus.reeb.reebgraph.ReebGraph method)
smoothing_and_maps() (cereeberus.reeb.mapper.MapperGraph method)
(cereeberus.reeb.reebgraph.ReebGraph method)
sort_edges() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
sort_vertices() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)
sorted_edges() (cereeberus.reeb.reebgraph.ReebGraph method)
sorted_vertices() (cereeberus.reeb.reebgraph.ReebGraph method)
subdivide_edge() (cereeberus.reeb.reebgraph.ReebGraph method)
summary() (cereeberus.reeb.reebgraph.ReebGraph method)
T
T() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
thickening_distance() (cereeberus.reeb.reebgraph.ReebGraph method)
thickening_distance_by_level() (cereeberus.reeb.mapper.MapperGraph method)
thickening_distance_matrix() (cereeberus.reeb.mapper.MapperGraph method)
to_indicator() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
(cereeberus.distance.labeled_blocks.LabeledMatrix method)
to_labeled_block() (cereeberus.distance.labeled_blocks.LabeledMatrix method)
to_labeled_matrix() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
to_mapper() (cereeberus.reeb.reebgraph.ReebGraph method)
to_shifted_blocks() (cereeberus.distance.labeled_blocks.LabeledBlockMatrix method)
torus() (in module cereeberus.data.ex_mappergraphs)
(in module cereeberus.data.ex_reebgraphs)
triangle() (cereeberus.distance.interleave.Assignment method)
triangle_matrix() (cereeberus.distance.interleave.Assignment method)
U
union() (cereeberus.compute.unionfind.UnionFind method)
UnionFind (class in cereeberus.compute.unionfind)
up_degree() (cereeberus.reeb.reebgraph.ReebGraph method)