Index

_

__init__() (cereeberus.compute.uf.UnionFind method) (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) (cereeberus.reeb.mapper.MapperGraph method) (cereeberus.reeb.merge.MergeTree method) (cereeberus.reeb.reebgraph.ReebGraph method)

A

add_edge() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) (cereeberus.reeb.mapper.MapperGraph method) (cereeberus.reeb.merge.MergeTree method) (cereeberus.reeb.reebgraph.ReebGraph method) add_edges_from() (cereeberus.reeb.reebgraph.ReebGraph method) add_label() (cereeberus.reeb.merge.MergeTree method) add_label_edge() (cereeberus.reeb.merge.MergeTree method)

add_node() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) (cereeberus.reeb.mapper.MapperGraph method) (cereeberus.reeb.merge.MergeTree method) (cereeberus.reeb.reebgraph.ReebGraph method) add_nodes() (in module cereeberus.compute.degree) add_nodes_from() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) (cereeberus.reeb.reebgraph.ReebGraph method)

B

bezier_curve() (in module cereeberus.compute.draw)

C

calcDistanceInfNorm() (in module cereeberus.compute.distance) calcDistanceMatrix() (in module cereeberus.compute.distance) cereeberus.compute.degree module cereeberus.compute.distance module cereeberus.compute.draw module cereeberus.compute.merge module cereeberus.compute.uf module cereeberus.data.ex_embedgraphs module cereeberus.data.ex_mappergraphs module

cereeberus.data.ex_mergetrees module cereeberus.data.ex_reebgraphs module cereeberus.reeb.embeddedgraph module cereeberus.reeb.mapper module cereeberus.reeb.merge module cereeberus.reeb.reebgraph module computeDistanceAtAngleFromMT() (in module cereeberus.compute.distance) computeDistanceFull() (in module cereeberus.compute.distance) computeGraphDistanceAtAngle() (in module cereeberus.compute.distance) computeMergeTree() (in module cereeberus.compute.merge) connected_components() (cereeberus.reeb.reebgraph.ReebGraph method)

D

dancing_man() (in module cereeberus.data.ex_mappergraphs) (in module cereeberus.data.ex_reebgraphs) dict_to_list() (in module cereeberus.compute.draw) directedMergeTreeDistance() (in module cereeberus.compute.distance)

down_degree() (cereeberus.reeb.reebgraph.ReebGraph method) (in module cereeberus.compute.degree) draw() (cereeberus.reeb.merge.MergeTree method) (cereeberus.reeb.reebgraph.ReebGraph method)

E

edit() (in module cereeberus.compute.distance)

EmbeddedGraph (class in cereeberus.reeb.embeddedgraph) exampleEmbeddedGraph() (in module cereeberus.data.ex_embedgraphs)

F

find() (cereeberus.compute.uf.UnionFind method)

findFiltration() (in module cereeberus.compute.distance) fix_pos_f() (cereeberus.reeb.merge.MergeTree method)

G

g_omega() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) g_omega_edges() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) get_bounding_box() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) get_bounding_radius() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) get_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) get_finite_nodes() (cereeberus.reeb.merge.MergeTree method) get_largest_component() (cereeberus.reeb.reebgraph.ReebGraph method) get_leaves() (cereeberus.reeb.merge.MergeTree method)

get_mean_centered_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) getHeightMatrix() (in module cereeberus.compute.distance) getMidpointKey() (in module cereeberus.compute.distance) getNumComponents() (cereeberus.compute.uf.UnionFind method) getSize() (cereeberus.compute.uf.UnionFind method) getSizeOfComponent() (cereeberus.compute.uf.UnionFind method) getSortedNodeHeights() (in module cereeberus.compute.uf) getUnitVector() (in module cereeberus.compute.distance)

H

heights() (in module cereeberus.compute.degree)

I

induced_subgraph() (cereeberus.reeb.mapper.MapperGraph method) (cereeberus.reeb.reebgraph.ReebGraph method)

inputToDirRootTree() (cereeberus.reeb.merge.MergeTree method) isFullyConnected() (cereeberus.compute.uf.UnionFind method) isMerge() (in module cereeberus.compute.merge)

J

juggling_man() (in module cereeberus.data.ex_mappergraphs) (in module cereeberus.data.ex_reebgraphs)

L

label_all_leaves() (cereeberus.reeb.merge.MergeTree method) LCA() (cereeberus.reeb.merge.MergeTree method)

LCA_matrix() (cereeberus.reeb.merge.MergeTree method) line_loop_index() (in module cereeberus.compute.draw) lower_edges() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)

M

MapperGraph (class in cereeberus.reeb.mapper) mapperify() (cereeberus.reeb.mapper.MapperGraph method) MergeTree (class in cereeberus.reeb.merge) minimal_reeb() (in module cereeberus.compute.degree) module cereeberus.compute.degree cereeberus.compute.distance cereeberus.compute.draw cereeberus.compute.merge cereeberus.compute.uf cereeberus.data.ex_embedgraphs cereeberus.data.ex_mappergraphs cereeberus.data.ex_mergetrees cereeberus.data.ex_reebgraphs cereeberus.reeb.embeddedgraph cereeberus.reeb.mapper cereeberus.reeb.merge cereeberus.reeb.reebgraph

N

next_vert_name() (cereeberus.reeb.reebgraph.ReebGraph method)

number_connected_components() (cereeberus.reeb.reebgraph.ReebGraph method)

P

plot() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method)

printAll() (cereeberus.compute.uf.UnionFind method)

R

randomizeMergeFunction() (in module cereeberus.data.ex_mergetrees) randomMergeTree() (in module cereeberus.data.ex_mergetrees) reeb_graph_from_direction() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) reeb_plot() (in module cereeberus.compute.draw) ReebGraph (class in cereeberus.reeb.reebgraph) remove_all_regular_vertices() (cereeberus.reeb.reebgraph.ReebGraph method)

remove_isolates() (cereeberus.reeb.reebgraph.ReebGraph method) (in module cereeberus.compute.degree) remove_node() (cereeberus.reeb.merge.MergeTree method) (cereeberus.reeb.reebgraph.ReebGraph method) remove_nodes_from() (cereeberus.reeb.reebgraph.ReebGraph method) remove_regular_vertex() (cereeberus.reeb.reebgraph.ReebGraph method) rerootComponent() (cereeberus.compute.uf.UnionFind method)

S

set_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) set_mean_centered_coordinates() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) set_pos_from_f() (cereeberus.reeb.mapper.MapperGraph method) (cereeberus.reeb.merge.MergeTree method) (cereeberus.reeb.reebgraph.ReebGraph method) signedDistToLine2Pts() (in module cereeberus.compute.uf) simple_loops() (in module cereeberus.data.ex_mappergraphs) (in module cereeberus.data.ex_reebgraphs)

simple_loops_unordered() (in module cereeberus.data.ex_mappergraphs) (in module cereeberus.data.ex_reebgraphs) slice() (cereeberus.reeb.reebgraph.ReebGraph method) slope_intercept() (in module cereeberus.compute.draw) sort_edges() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) sort_vertices() (cereeberus.reeb.embeddedgraph.EmbeddedGraph method) subdivide_edge() (cereeberus.reeb.reebgraph.ReebGraph method) summary() (cereeberus.reeb.reebgraph.ReebGraph method)

T

to_mapper() (cereeberus.reeb.reebgraph.ReebGraph method)

torus() (in module cereeberus.data.ex_mappergraphs) (in module cereeberus.data.ex_reebgraphs)

U

union() (cereeberus.compute.uf.UnionFind method) UnionFind (class in cereeberus.compute.uf)

up_degree() (cereeberus.reeb.reebgraph.ReebGraph method) (in module cereeberus.compute.degree)